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Citing St. Jude Cloud

We are currently in progress of preparing the St. Jude Cloud manuscript. Until further notice, please ensure that when St. Jude Cloud or data accessed therein is used in your work, please:

  1. Cite the relevant paper for each of the datasets and/or resources (see table below) that you used in your study.

  2. State in the Results and/or Methods section that the relevant data was obtained from St. Jude Cloud. Example statement:

    "Whole genome sequencing data for relapse tumor samples from 345 pediatric patients were obtained from St. Jude Cloud."

  3. State in the Data availability section of the manuscript that data can be accessed via St. Jude Cloud. Example statement:

    "Whole genome sequencing data for pediatric relapse tumor samples used for analysis in this study were obtained from St. Jude Cloud ( – a publically accessible pediatric genomic data resource requiring approval for controlled data access."

Citation Reference Table

St. Jude Cloud Resource Citation
Pediatric Cancer Genome Project (PCGP) dataset PCGP perspectives paper and the relevant tumor type paper(s)
St. Jude Lifetime (SJLIFE) dataset SJLIFE paper
Clinical Pilot (non-G4K clinical genomics) dataset Clinical Pilot paper
Genomes for Kids (G4K) dataset paper in progress
Sickle Cell Genome Project (SGP) dataset paper in progress
Childhood Cancer Survivor Study (CCSS) dataset CCSS study design paper
ProteinPaint ProteinPaint paper
GenomePaint paper in progress
PeCan Pie PeCan Pie paper
NeoepitopePred NeoepitopePred paper
ChIP-Seq Peak Calling unpublished
Rapid RNA-Seq Fusion Detection paper in progress
WARDEN unpublished
Mutational Signatures Mutational Patterns paper
cis-x paper in progress
XenoCP paper in progress


If you are unsure what datasets the data that you have been vended belongs to, you can find this information in the sj_datasets column of the SAMPLE_INFO.txt file.


Publishing using any of the data files before the embargo date has passed is strictly prohibited as outlined in the Data Access Agreement (DAA).

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